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Issue#430/rename all files pep8 compliance

This MR get some of changes I have done for issue #430 (closed) concerning pep8/pylint compliance about modules name.

It also includes:

  • mypy_act2 from @inglada
  • issue #245 (closed) about os.system
  • correct three tests about previous refactoring
  • correct Parameters field in docstring (: or missing s)
  • add .pylintrc in iota2/iota2 to be used without specify the one in utilities
  • isort was passed over all source files (part of #464 (closed) )
  • merge contributing branch
  • merge !52 (closed)
  • remove Publishing folder
  • introduce entry_points for executables

The .pylintrc file was generated with new pylint version, which is compatible with the current version.

Some error codes had been added to ignore certain messages, I will list them in issue #456 (closed) to take them into account later.

Edited by Hugo Trentesaux

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