pickcells-essentials issueshttps://framagit.org/pickcellslab/pickcells-essentials/-/issues2019-06-12T08:42:07Zhttps://framagit.org/pickcellslab/pickcells-essentials/-/issues/42Filtering issue in NeighboursCounter2019-06-12T08:42:07ZGuillaume BlinFiltering issue in NeighboursCounterWhen selection the type of object that need to be counted, the user is given the choice to add a filter to the query.
This filter is not taken into account in the analysis.When selection the type of object that need to be counted, the user is given the choice to add a filter to the query.
This filter is not taken into account in the analysis.Guillaume BlinGuillaume Blinhttps://framagit.org/pickcellslab/pickcells-essentials/-/issues/31Erased shapes remain visible in Segmentation Editor2020-02-13T09:31:58ZGuillaume BlinErased shapes remain visible in Segmentation EditorSee [this post](https://colony.pickcellslab.org/t/segmentation-eraser/120)See [this post](https://colony.pickcellslab.org/t/segmentation-eraser/120)https://framagit.org/pickcellslab/pickcells-essentials/-/issues/22Create 'Reorient PCA Vector' Utility2022-06-03T13:07:33ZGuillaume BlinCreate 'Reorient PCA Vector' UtilityFor PCA vectors created by the EllipseComputer in pickcells-coremodules, vectors define an orientation but their sense is actually arbitrary. However it would help if a convention would be established to define the sense, for example whe...For PCA vectors created by the EllipseComputer in pickcells-coremodules, vectors define an orientation but their sense is actually arbitrary. However it would help if a convention would be established to define the sense, for example when one wants to analyse the behaviour of nuclei shapes with respect to other landmarks.
A new 'Utility' interface is available [in pickCells-api](https://framagit.org/pickcellslab/pickcells-api/issues/6) where it would be possible to add a function which takes all the PCA vectors and ensure that the sense follow the same convention, for example: for each component, if angle with norm vector > 90, then change the senseGuillaume BlinGuillaume Blinhttps://framagit.org/pickcellslab/pickcells-essentials/-/issues/21Add an option for noise removal in Nessys2022-06-03T13:07:33ZGuillaume BlinAdd an option for noise removal in NessysAn optional step for noise removal should be available in Nessys after the channel choice stepAn optional step for noise removal should be available in Nessys after the channel choice stepGuillaume BlinGuillaume Blinhttps://framagit.org/pickcellslab/pickcells-essentials/-/issues/20RelativeConnector fails if targets are ImageDots2022-06-03T13:07:34ZGuillaume BlinRelativeConnector fails if targets are ImageDotsThe user is allowed to choose ImageDot objects as target inputs for Relative Connector, however, this is not properly supported currentlyThe user is allowed to choose ImageDot objects as target inputs for Relative Connector, however, this is not properly supported currentlyGuillaume BlinGuillaume Blinhttps://framagit.org/pickcellslab/pickcells-essentials/-/issues/18Ordering of Columns in the table picker2022-06-03T13:07:33ZGuillaume BlinOrdering of Columns in the table pickerCurrently columns are ordered randomly in the [table picker](https://framagit.org/pickcellslab/pickcells-essentials/blob/master/pickcells-coremodules/src/main/java/org/pickcellslab/pickcells/picking/TablePicker.java), this is not conveni...Currently columns are ordered randomly in the [table picker](https://framagit.org/pickcellslab/pickcells-essentials/blob/master/pickcells-coremodules/src/main/java/org/pickcellslab/pickcells/picking/TablePicker.java), this is not convenient.
See also [this post](https://colony.pickcellslab.org/t/search-what-each-channel-represents-during-analysis/54/2?u=ghiomm)https://framagit.org/pickcellslab/pickcells-essentials/-/issues/13Display the current number of objects in editors2017-08-08T15:30:10ZGuillaume BlinDisplay the current number of objects in editorsSuggested in [this PickCells Colony post](https://colony.pickcellslab.org/t/display-number-of-objects-eg-segmentation-or-dots-in-an-image-while-editing/55?u=ghiomm)Suggested in [this PickCells Colony post](https://colony.pickcellslab.org/t/display-number-of-objects-eg-segmentation-or-dots-in-an-image-while-editing/55?u=ghiomm)https://framagit.org/pickcellslab/pickcells-essentials/-/issues/8No warning message when experiment database cannot be found on file system2017-07-27T09:15:42ZGuillaume BlinNo warning message when experiment database cannot be found on file systemThe problem occurs when a database has been removed from the file system but not from the admin database. When the user launches the 'non-existent' database, he/she ends up on a blank MetaModel page in the workbench with no message. Ther...The problem occurs when a database has been removed from the file system but not from the admin database. When the user launches the 'non-existent' database, he/she ends up on a blank MetaModel page in the workbench with no message. There should be a a mechanism to warn the user of the issue and allow the user to update or delete the obsolete entry.https://framagit.org/pickcellslab/pickcells-essentials/-/issues/5Experiment Tree updating issue2019-05-23T14:22:14ZGuillaume BlinExperiment Tree updating issueIn the welcome screen, when deleting a user or an experiment, the tree view does not always reflect the changes accuratelyIn the welcome screen, when deleting a user or an experiment, the tree view does not always reflect the changes accuratelyhttps://framagit.org/pickcellslab/pickcells-essentials/-/issues/1Improve File format support - ioImpl2022-06-03T13:07:34ZGuillaume BlinImprove File format support - ioImplCurrently the file formats that can be imported is limited. We should use the full potential of BioformatsCurrently the file formats that can be imported is limited. We should use the full potential of BioformatsGuillaume BlinGuillaume Blin