Nessys error with 2D datasets
The following stacktrace is thrown when running Nessys with a 2D image:
org.pickcellslab.pickcells.ioImpl.PickCellsImgWriter.getPlaneIndex(PickCellsImgWriter.java:149) org.pickcellslab.pickcells.ioImpl.PickCellsImgWriter.writeChannelFrame(PickCellsImgWriter.java:124) org.pickcellslab.pickcells.api.img.pipeline.SingleChannelImgWriteManager.writeFrame(SingleChannelImgWriteManager.java:49) org.pickcellslab.pickcells.api.img.pipeline.FileInputManager.run(FileInputManager.java:43) org.pickcellslab.pickcells.api.img.pipeline.FileInputManager.run(FileInputManager.java:34) org.pickcellslab.pickcells.api.img.pipeline.DefaultProcessingPipeline.runPipeline(DefaultProcessingPipeline.java:89) org.pickcellslab.pickcells.segmentation.RidgeBasedSegmentation.run(RidgeBasedSegmentation.java:98)
In addition, UI does not update when training a classifier (object contours remain blue when right clicking on the shapes).