Unverified Commit 816d52ba authored by Ricardo Wurmus's avatar Ricardo Wurmus
Browse files

gnu: Add r-megadepth.

* gnu/packages/bioconductor.scm (r-megadepth): New variable.
parent c82b723b
......@@ -13700,6 +13700,39 @@ visualization of transcript structures, and matching of assembled transcripts
to annotation.")
(license license:artistic2.0)))
(define-public r-megadepth
(name "r-megadepth")
(version "1.2.3")
(method url-fetch)
(uri (bioconductor-uri "megadepth" version))
(properties `((upstream-name . "megadepth")))
(build-system r-build-system)
(inputs `(("megadepth" ,megadepth)))
`(("r-cmdfun" ,r-cmdfun)
("r-dplyr" ,r-dplyr)
("r-fs" ,r-fs)
("r-genomicranges" ,r-genomicranges)
("r-magrittr" ,r-magrittr)
("r-readr" ,r-readr)
("r-xfun" ,r-xfun)))
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/LieberInstitute/megadepth")
(synopsis "BigWig and BAM related utilities")
"This package provides an R interface to Megadepth. It is particularly
useful for computing the coverage of a set of genomic regions across bigWig or
BAM files. With this package, you can build base-pair coverage matrices for
regions or annotations of your choice from BigWig files.")
(license license:artistic2.0)))
(define-public r-tximeta
(name "r-tximeta")
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment