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Denis 'GNUtoo' Carikli
guix
Commits
816d52ba
Unverified
Commit
816d52ba
authored
Sep 06, 2021
by
Ricardo Wurmus
Browse files
gnu: Add r-megadepth.
* gnu/packages/bioconductor.scm (r-megadepth): New variable.
parent
c82b723b
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1
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gnu/packages/bioconductor.scm
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816d52ba
...
@@ -13700,6 +13700,39 @@ visualization of transcript structures, and matching of assembled transcripts
...
@@ -13700,6 +13700,39 @@ visualization of transcript structures, and matching of assembled transcripts
to annotation."
)
to annotation."
)
(
license
license:artistic2
.
0
)))
(
license
license:artistic2
.
0
)))
(
define-public
r-megadepth
(
package
(
name
"r-megadepth"
)
(
version
"1.2.3"
)
(
source
(
origin
(
method
url-fetch
)
(
uri
(
bioconductor-uri
"megadepth"
version
))
(
sha256
(
base32
"0grgj7bzyqnxby0sx5ic1h9bzmx19xwl0a5b3v6wbnwqcla2i3kg"
))))
(
properties
`
((
upstream-name
.
"megadepth"
)))
(
build-system
r-build-system
)
(
inputs
`
((
"megadepth"
,
megadepth
)))
(
propagated-inputs
`
((
"r-cmdfun"
,
r-cmdfun
)
(
"r-dplyr"
,
r-dplyr
)
(
"r-fs"
,
r-fs
)
(
"r-genomicranges"
,
r-genomicranges
)
(
"r-magrittr"
,
r-magrittr
)
(
"r-readr"
,
r-readr
)
(
"r-xfun"
,
r-xfun
)))
(
native-inputs
`
((
"r-knitr"
,
r-knitr
)))
(
home-page
"https://github.com/LieberInstitute/megadepth"
)
(
synopsis
"BigWig and BAM related utilities"
)
(
description
"This package provides an R interface to Megadepth. It is particularly
useful for computing the coverage of a set of genomic regions across bigWig or
BAM files. With this package, you can build base-pair coverage matrices for
regions or annotations of your choice from BigWig files."
)
(
license
license:artistic2
.
0
)))
(
define-public
r-tximeta
(
define-public
r-tximeta
(
package
(
package
(
name
"r-tximeta"
)
(
name
"r-tximeta"
)
...
...
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