Unverified Commit 816d52ba authored by Ricardo Wurmus's avatar Ricardo Wurmus
Browse files

gnu: Add r-megadepth.

* gnu/packages/bioconductor.scm (r-megadepth): New variable.
parent c82b723b
...@@ -13700,6 +13700,39 @@ visualization of transcript structures, and matching of assembled transcripts ...@@ -13700,6 +13700,39 @@ visualization of transcript structures, and matching of assembled transcripts
to annotation.") to annotation.")
(license license:artistic2.0))) (license license:artistic2.0)))
(define-public r-megadepth
(package
(name "r-megadepth")
(version "1.2.3")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "megadepth" version))
(sha256
(base32
"0grgj7bzyqnxby0sx5ic1h9bzmx19xwl0a5b3v6wbnwqcla2i3kg"))))
(properties `((upstream-name . "megadepth")))
(build-system r-build-system)
(inputs `(("megadepth" ,megadepth)))
(propagated-inputs
`(("r-cmdfun" ,r-cmdfun)
("r-dplyr" ,r-dplyr)
("r-fs" ,r-fs)
("r-genomicranges" ,r-genomicranges)
("r-magrittr" ,r-magrittr)
("r-readr" ,r-readr)
("r-xfun" ,r-xfun)))
(native-inputs
`(("r-knitr" ,r-knitr)))
(home-page "https://github.com/LieberInstitute/megadepth")
(synopsis "BigWig and BAM related utilities")
(description
"This package provides an R interface to Megadepth. It is particularly
useful for computing the coverage of a set of genomic regions across bigWig or
BAM files. With this package, you can build base-pair coverage matrices for
regions or annotations of your choice from BigWig files.")
(license license:artistic2.0)))
(define-public r-tximeta (define-public r-tximeta
(package (package
(name "r-tximeta") (name "r-tximeta")
......
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