Commit c2a11cee authored by Sebastien's avatar Sebastien

Ajout du CLI-A : outil qui lance orthomcl et produit les fichiers generiques...

Ajout du CLI-A : outil qui lance orthomcl et produit les fichiers generiques globaux (core proteomes, stats, diagramme de Venn)
Ajout de OrthoMCL 1.4 modifie pour l'utilisation de blast+
parent c4ff77bd
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{
"contact" : "sebastien.carrere@toulouse.inra.fr",
"title" : "Low Stringency analysis test",
"orthomcl" : {
"parameters" : " --pmatch_cutoff=60 "
},
"proteomes" : {
"yeast" : {
"reference" : false,
"fasta" : "Sce.fa",
"title" : "Yeast proteome",
"iprscan" : "Sce.iprscan"
},
"human" : {
"title" : "Homo sapiens proteome",
"fasta" : "Hsa.fa",
"iprscan" : "Hsa.iprscan",
"reference" : false
},
"arath" : {
"title" : "Arabidopsis thaliana Col-0 proteome",
"reference" : true,
"iprscan" : "Ath.iprscan",
"fasta" : "Ath.fa"
}
}
}
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