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Commit ba69a579 authored by Sebastien Carrere's avatar Sebastien Carrere

Construction matrice pour INChlib

parent eea22565
inchlib_clust-0.1.4
\ No newline at end of file
Credits
=======
“inchlib_clust” is written and maintained by Ctibor Skuta.
\ No newline at end of file
Changelog for pem
=================
0.1.4 (26-03-2015)
------------------
- added functionality to add alternative data to the InCHlib format
- bug fixes and minor improvements
0.1.3 (18-09-2014)
------------------
- added functionality to process data with missing/unknown values
- added functionality to add column metadata for clustered data
- bug fixes and improvements
0.1.2 (28-08-2014)
------------------
- export_cluster_heatmap_as_html() function added
0.1.1 (08-07-2014)
------------------
- Minor fixes in functioning
- There is further no need to use independent hcluster library
0.1.0 (05-02-2014)
------------------
- Initial release.
\ No newline at end of file
Copyright (c) 2015 Ctibor Skuta
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal in
the Software without restriction, including without limitation the rights to
use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
of the Software, and to permit persons to whom the Software is furnished to do
so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
\ No newline at end of file
Metadata-Version: 1.1
Name: inchlib_clust
Version: 0.1.4
Summary: Cluster and prepare data in proper format for InCHlib library
Home-page: http://openscreen.cz/software/inchlib/download
Author: Ctibor Skuta
Author-email: skuta.ctibor@gmail.com
License: MIT
Description: inchlib_clust: Clustering and data preparation for InCHlib
==========================
Changelog for pem
=================
0.1.4 (26-03-2015)
------------------
- added functionality to add alternative data to the InCHlib format
- bug fixes and minor improvements
0.1.3 (18-09-2014)
------------------
- added functionality to process data with missing/unknown values
- added functionality to add column metadata for clustered data
- bug fixes and improvements
0.1.2 (28-08-2014)
------------------
- export_cluster_heatmap_as_html() function added
0.1.1 (08-07-2014)
------------------
- Minor fixes in functioning
- There is further no need to use independent hcluster library
0.1.0 (05-02-2014)
------------------
- Initial release.
Credits
=======
“inchlib_clust” is written and maintained by Ctibor Skuta.
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Natural Language :: English
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Topic :: Software Development :: Libraries :: Python Modules
inchlib_clust: Clustering and data preparation for InCHlib
==========================
\ No newline at end of file
Metadata-Version: 1.1
Name: inchlib-clust
Version: 0.1.4
Summary: Cluster and prepare data in proper format for InCHlib library
Home-page: http://openscreen.cz/software/inchlib/download
Author: Ctibor Skuta
Author-email: skuta.ctibor@gmail.com
License: MIT
Description: inchlib_clust: Clustering and data preparation for InCHlib
==========================
Changelog for pem
=================
0.1.4 (26-03-2015)
------------------
- added functionality to add alternative data to the InCHlib format
- bug fixes and minor improvements
0.1.3 (18-09-2014)
------------------
- added functionality to process data with missing/unknown values
- added functionality to add column metadata for clustered data
- bug fixes and improvements
0.1.2 (28-08-2014)
------------------
- export_cluster_heatmap_as_html() function added
0.1.1 (08-07-2014)
------------------
- Minor fixes in functioning
- There is further no need to use independent hcluster library
0.1.0 (05-02-2014)
------------------
- Initial release.
Credits
=======
“inchlib_clust” is written and maintained by Ctibor Skuta.
Platform: UNKNOWN
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Developers
Classifier: Natural Language :: English
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.3
Classifier: Topic :: Software Development :: Libraries :: Python Modules
AUTHORS.rst
HISTORY.rst
LICENSE
MANIFEST.in
README.rst
inchlib_clust.py
setup.cfg
setup.py
inchlib_clust.egg-info/PKG-INFO
inchlib_clust.egg-info/SOURCES.txt
inchlib_clust.egg-info/dependency_links.txt
inchlib_clust.egg-info/top_level.txt
\ No newline at end of file
This diff is collapsed.
[wheel]
universal = 1
[egg_info]
tag_build =
tag_date = 0
tag_svn_revision = 0
import os
from setuptools import setup
def read(*paths):
"""Build a file path from *paths* and return the contents."""
with open(os.path.join(*paths), 'r') as f:
return f.read()
setup(
name='inchlib_clust',
version='0.1.4',
description='Cluster and prepare data in proper format for InCHlib library',
long_description=(read('README.rst') + '\n\n' +
read('HISTORY.rst') + '\n\n' +
read('AUTHORS.rst')),
url='http://openscreen.cz/software/inchlib/download',
license='MIT',
author='Ctibor Skuta',
author_email='skuta.ctibor@gmail.com',
py_modules=['inchlib_clust'],
include_package_data=True,
classifiers=[
'Development Status :: 5 - Production/Stable',
'Intended Audience :: Developers',
'Natural Language :: English',
'License :: OSI Approved :: MIT License',
'Operating System :: OS Independent',
'Programming Language :: Python',
'Programming Language :: Python :: 2.7',
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.3',
'Topic :: Software Development :: Libraries :: Python Modules',
],
)
\ No newline at end of file
......@@ -41,6 +41,7 @@ require 'WebApp.pl';
require 'OrthomclCompanion/Utils.pl';
use constant DEBUG => &FALSE;
use constant DEBUGWS => &TRUE;
use constant LOCALPASSWORD => &FALSE;
use constant DESC_FILE => "$FindBin::RealBin/../web/xml/portal.xml";
......@@ -96,10 +97,10 @@ sub Main
{
my ($o_webparam) = @_;
$O_CONF = New ParamParser('INIT');
$O_CONF = New ParamParser("$FindBin::RealBin/../site/cfg/site.cfg");
$O_CONF->SetBehaviour('use_substitution_table');
$O_CONF->SetSubstitution('%S', \$O_CONF->Get('portal_web_server'));
$O_CONF->SetSubstitution('%I', \$O_CONF->Get('portal_install_dir'));
$O_CONF->Update("$FindBin::RealBin/../site/cfg/site.cfg", 'O');
my $appli_url =
......
This diff is collapsed.
portal_web_server=http://localhost
portal_web_server=https://lipm-hal.toulouse.inra.fr
portal_http_root=/orthomcl-companion
portal_install_dir=/var/www/html/orthomcl-companion
portal_install_dir=/www-hal/orthomcl-companion
cli_mafft_path=/usr/bin/mafft
store_dir=/site/data/store
admin_mail=sebastien.carrere@toulouse.inra.fr,ludovic.cottret@toulouse.inra.fr,corinne.rancurel@sophia.inra.fr,martial.briand@angers.inra.fr
workdir_tmp=/tmp
inchlib_clust=%I/bin/ext/inchlib_clust/inchlib_clust.py
authentic_cookie_name=orthomcl-companion
......
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