Commit 1f16be67 authored by Sebastien's avatar Sebastien

Le fichier orthomcl.out doit s'appeller maintenant homologygroups.out pour etre generaliste

Fix #61
parent 307a4e57
<!DOCTYPE html>
<html>
<h1 id="orthomclcompanion-file-formats">OrthoMCL-Companion File Formats</h1>
<h1 id="familycompanion-file-formats">Family-Companion File Formats</h1>
<p><p><div class="toc">
<ul>
......@@ -117,8 +117,8 @@ $SEQIDa 14086411a2cdf1c4cba63020e1622579 3418 Gene3D G3DSA:2.40.50.140
<pre><code>|--title.txt
|--description.txt
|--reference.txt
|--orthomcl.out
|--orthomcl.txt
|--homologygroups.out
|--homologygroups.txt
|--$TAXONa.txt
|--$TAXONa.fa
|--$TAXONa.iprscan
......@@ -154,13 +154,13 @@ $SEQIDa 14086411a2cdf1c4cba63020e1622579 3418 Gene3D G3DSA:2.40.50.140
</tr>
<tr>
<td>orthomcl.out</td>
<td>homologygroups.out</td>
<td>OrthoMCL/Synergy/OrthoFinder matrix file</td>
<td>No</td>
</tr>
<tr>
<td>orthomcl.txt</td>
<td>homologygroups.txt</td>
<td>OrthoMCL/Synergy/OrthoFinder parameters</td>
<td>No</td>
</tr>
......
......@@ -242,9 +242,9 @@ sub __ValidZipContent
}
#Gestion des parametres orthomcl
if (-e "$dirname/orthomcl.txt")
if (-e "$dirname/homologygroups.txt")
{
my $o_pportho = New ParamParser("$dirname/orthomcl.txt");
my $o_pportho = New ParamParser("$dirname/homologygroups.txt");
$o_pportho->Dump('HASH', $h_data{"homologygroups"});
}
......
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